{ "_id": "6ad534cd7f75c4fbd3a1e05a", "Package": "TrackTrap", "Title": "Calculate and Visualize Degree-Days for Pest Monitoring", "Version": "1.1.0", "Authors@R": "c(\nperson(\"Santosh\", \"Bhandari\",\nemail = \"santoshbhandari4556@gmail.com\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Lalit\", \"Kharel\",\nemail = \"klalitkharel@gmail.com\",\nrole = \"aut\"),\nperson(\"Mahesh\", \"Ghimire\",\nemail = \"maesghimire@gmail.com\",\nrole = \"aut\")\n)", "Description": "Combines pest trap observations with daily temperatures to\ncalculate and visualize cumulative degree-days. Temperature\ninputs include 'Daymet' , 'Open-Meteo'\n, reports from the California\nIrrigation Management Information System ('CIMIS')\n, and user-supplied daily weather\ndata. Degree-days are calculated using the simple-average\nmethod with either an upper threshold applied to the daily mean\nor an explicitly selected calculation without an upper cutoff.\nThe first positive trap count defines the biofix for every\npest, with accumulation beginning on the following day.\nNegative daily degree-day values are set to zero. Users can\nprovide temperature thresholds and optional thermal reference\nvalues. Thermal reference markers and their multiples do not\nindependently establish flight or generation identities.\nComplete daily calculations and weather provenance are retained\nwith the output to support reproducibility.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "LazyData": "true", "Config/roxygen2/version": "8.1.0", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibicu-dev libnetcdf-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev", "Repository": "https://santosh4355.r-universe.dev", "Date/Publication": "2026-10-18 20:36:35 UTC", "RemoteUrl": "https://github.com/santosh4355/tracktrap", "RemoteRef": "HEAD", "RemoteSha": "0f59883fdbdf7fcc6ced9ca2a8b4a62ea2c32f65", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-18 21:03:26 UTC", "User": "root" }, "Author": "Santosh Bhandari [aut, cre],\nLalit Kharel [aut],\nMahesh Ghimire [aut]", 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"email": "santoshbhandari4556@gmail.com", "login": "santosh4355", "description": "Data Science Enthusiast", "uuid": 207969838 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "daymetr", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "ggplot2", "version": ">= 3.4.0", "role": "Imports" }, { "package": "httr", "role": "Imports" }, { "package": "magrittr", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "santosh4355", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2026-33", "n": 5 }, { "week": "2026-35", "n": 1 }, { "week": "2026-39", "n": 9 }, { "week": "2026-42", "n": 11 } ], "_tags": 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"fetch_open_meteo", "plot_trap_phenology" ], "_datasets": [ { "name": "pest_thresholds", "title": "Pest temperature thresholds and thermal reference values", "object": "pest_thresholds", "class": [ "data.frame" ], "fields": [ "pest_code", "pest_name", "scientific_name", "lower_thresh", "upper_thresh", "thermal_requirement_dd", "lower_source", "upper_source", "thermal_requirement_source", "thermal_requirement_endpoint" ], "rows": 90, "table": true, "tojson": true } ], "_help": [ { "page": "calc_pest_phenology", "title": "Calculate a simple-average degree-day index for trap observations", "topics": [ "calc_pest_phenology" ] }, { "page": "fetch_open_meteo", "title": "Fetch daily historical Open-Meteo temperatures in Fahrenheit", "topics": [ "fetch_open_meteo" ] }, { "page": "pest_thresholds", "title": "Pest temperature thresholds and thermal reference values", "topics": [ "pest_thresholds" ] }, { "page": "plot_trap_phenology", "title": "Plot trap catches against the calculated DD index", "topics": [ "plot_trap_phenology" ] } ], "_rundeps": [ "askpass", "class", "classInt", "cli", "cpp11", "curl", "daymetr", "DBI", "dplyr", "e1071", "farver", "generics", "ggplot2", "glue", "gtable", "httr", "isoband", "jsonlite", "KernSmooth", "labeling", "lifecycle", "magrittr", "mime", "ncdf4", "openssl", "pillar", "pkgconfig", "proxy", "purrr", "R6", "RColorBrewer", "Rcpp", "rlang", "s2", "S7", "scales", "sf", "stringi", "stringr", "sys", "terra", "tibble", "tidyr", "tidyselect", "units", "utf8", "vctrs", "viridisLite", "withr", "wk" ], "_vignettes": [ { "source": "cimis-manual-workflow.rmd", "filename": "cimis-manual-workflow.html", "title": "Using a manually downloaded CIMIS CSV with TrackTrap", "engine": "knitr::rmarkdown", "headings": [ "When to use this", "1. 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